fMRI Primer
2007 September 14
08 Registration
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DTI data analysis (in progress!)
FSL Primer
01 Introduction to the Problem
02 Basic Theory
03 Optimal Design
03.1 The Importance of Removing Baseline
03.2 Sources of Blur
04 Scan Administration
05 Retreiving Data from the Scanner
06 Formatting Data to Begin Analysis
06.1 AVWsplit and other commands to trim scans
07 Brain Extraction
08 Registration
09 Preparing Regressors
09.1 Linear Combination: The Archenemy of Regression
10 Preparing to run FEAT
10.1 Optimal Directory Structure
11 Pre-Processing
11.1 Spatial Smoothing
12 FEAT – Individual
12.1 Understanding Orthogonalization
12.2 Creating a Mask
12.3 Subtractions
12.4 Conjunctions versus Averages
12.5 Within-Subject Group Analysis
12.6 Batch Processing in FEAT
13 FEAT – Group
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